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--- crystallography:processing:igbmc_cluster [2016/05/19 12:50] – created bonnefon
+++ crystallography:processing:igbmc_cluster [2023/11/01 20:19] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ==== Access and usage of the IGBMC HPC cluster ====
 First you need to verify that your environment is properly set.
@@ Line 9: / Line 10: @@
 <code>>sbatch -p surf cmd</code>
-The command then gives a job execution number.
+  * The command then gives a job execution number.
+  * <q>>scontrol show job <job-number></q> allows you to follow the execution of the job
-<code>>scontrol show job <job-number></code> allows you to follow the execution of the job
+  * <q>>scancel <job-number></q> allows you to kill the job
-<code>>scontrol show job <job-number></code> allows you to kill the job
 The job will generate output files:
@@ Line 19: / Line 18: @@
   * //slurm-<job-number>.e// in case of errors
-In case of necessity the debug line <code>sbatch -p debug</code> allows you to use two additional lames (16 procs with 24GB memory)
+In case of necessity the debug line <q>sbatch -p debug</q> allows you to use two additional lames (16 procs with 24GB memory)
 There are options to:
-  * specify the memory required <code>>sbatch -p surf --mem=xxMB</code>
+  * specify the memory required <q>>sbatch -p surf --mem=xxMB</q>
-  * specify the number of processors required <code>>sbatch -p surf --cpus--per-task=24</code> (if you specify more than 24, the number of available lames for your job will be very limited)
+  * specify the number of processors required <q>>sbatch -p surf --cpus--per-task=24</q> (if you specify more than 24, the number of available lames for your job will be very limited)
 The cmd script must start with <code>#!/bin/bash</code> and should set the necessary environement.
-All alias can be checked with the command <code>>alias</code>
+All alias can be checked with the command <q>>alias</q>