Differences

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--- electron_microscopy [2023/03/29 12:01] – [Grids screening and data collection] crucifix
+++ electron_microscopy [2024/03/28 16:10] (current) – [Datasets analysis] Luc Bonnefond
@@ Line 5: / Line 5: @@
-==== Grids preparation ====
+===== Grids preparation =====
@@ Line 15: / Line 15: @@
-==== Grids screening and data collection ====
-=== Glacios microscope ===
+----
+===== Grids screening and data collection =====
+==== Titan microscope ====
+==== Titan II microscope ====
+[[titan2_ack|Acknowledgement]]
+==== Glacios microscope ====
 [[glacios_interface|The Glacios microscope interfaces]]
@@ Line 31: / Line 40: @@
 [[collected datasets|Recovering collected datasets]]
-=== Titan microscope ===
+==== TF20 microscope ====
-=== TF20 microscope ===
 [[TF20_interface|TF20 microscope interfaces]]
@@ Line 40: / Line 47: @@
 [[TF20_screening|Screening at TF20]]
-==== Datasets analysis ====
+----
+===== Datasets analysis =====
+[[https://github.com/phonchi/Computational-CryoEM|Computational CryoEM Methods]]
+[[hpc|Using the HPC cluster of the Centre de Calcul du Datacenter de l'Unistra (CCDU) a.k.a. mesocenter]]
+[[hpc_igbmc|Using the HPC cluster of IGBMC]]
 [[calculation servers|CPU and GPU calculation servers]]
@@ Line 47: / Line 60: @@
 [[DMP|CBI-Storage data management plan]]
-[[CBI-Storage space|CBI-Storage space]]
+[[common cryoSPARC|CBI cryoSPARC instance]]
+[[team_gpu|Team specific GPU node]]
+[[sagsub|Streptavidin affinity grids lattice substraction]]
-[[common cryoSPARC|common cryoSPARC install]]
+[[titan_to_process|Pre-processing of dataset from Titan II]]
 [[relion|Using Relion]]
@@ Line 55: / Line 72: @@
 [[cryosparc|Using cryoSPARC]]
-[[hpc|Using the HPC cluster of the Centre de Calcul du Datacenter de l'Unistra (CCDU)]]
+[[intranet|Accessing IGBMC services from outside]]
-[[modelangelo|Using ModelAngelo]]