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electron_microscopy [2023/11/01 20:18] – external edit 127.0.0.1electron_microscopy [2024/03/28 16:10] (current) – [Datasets analysis] Luc Bonnefond
Line 23: Line 23:
  
 ==== Titan II microscope ==== ==== Titan II microscope ====
 +
 +[[titan2_ack|Acknowledgement]]
  
 ==== Glacios microscope ==== ==== Glacios microscope ====
Line 48: Line 50:
 ===== Datasets analysis ===== ===== Datasets analysis =====
  
 +[[https://github.com/phonchi/Computational-CryoEM|Computational CryoEM Methods]]
 +
 +[[hpc|Using the HPC cluster of the Centre de Calcul du Datacenter de l'Unistra (CCDU) a.k.a. mesocenter]]
 +
 +[[hpc_igbmc|Using the HPC cluster of IGBMC]]
  
 [[calculation servers|CPU and GPU calculation servers]] [[calculation servers|CPU and GPU calculation servers]]
Line 53: Line 60:
 [[DMP|CBI-Storage data management plan]] [[DMP|CBI-Storage data management plan]]
  
-[[common cryoSPARC|common cryoSPARC install]]+[[common cryoSPARC|CBI cryoSPARC instance]]
  
-[[relion|Using Relion]]+[[team_gpu|Team specific GPU node]]
  
-[[cryosparc|Generate a defect file for cryoSPARC]]+[[sagsub|Streptavidin affinity grids lattice substraction]]
  
-[[hpc|Using the HPC cluster of the Centre de Calcul du Datacenter de l'Unistra (CCDU) a.k.a. mesocenter]]+[[titan_to_process|Pre-processing of dataset from Titan II]]
  
-[[hpc_igbmc|Using the HPC cluster of IGBMC]]+[[relion|Using Relion]] 
 + 
 +[[cryosparc|Using cryoSPARC]] 
 + 
 +[[intranet|Accessing IGBMC services from outside]]
  
-[[modelangelo|Using ModelAngelo]] 
electron_microscopy.1698869930.txt.gz · Last modified: by 127.0.0.1