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sagsub [2024/04/24 07:57] – Luc Bonnefondsagsub [2024/08/29 06:56] (current) – Luc Bonnefond
Line 9: Line 9:
 Log onto the Lamour GPU node: Log onto the Lamour GPU node:
 <code> <code>
-ssh login@hpc.igbmc.fr +ssh my_login@hpc.igbmc.fr 
-ssh login@phantom-node39+ssh my_login@phantom-node39
 </code> </code>
  
Line 18: Line 18:
  
 <code> <code>
-ssh login@hpc.igbmc.fr +ssh my_login@hpc.igbmc.fr 
-ssh login@phantom-node39+ssh my_login@phantom-node39
 module load python/3.9 module load python/3.9
 pip3 install mrcfile pip3 install mrcfile
Line 33: Line 33:
 python3 ~/SAGsub3/sagsub_3-2_stable_parallel_nils.py --force_apix 0.729 python3 ~/SAGsub3/sagsub_3-2_stable_parallel_nils.py --force_apix 0.729
 </code> </code>
-The <quote>--force_apix 0.729</quote> is for Krios2 datasets; it needs to be changed for the other microscopes/cameras+The <quote>--force_apix 0.729</quote> is for Krios2 datasets; it needs to be changed for the other microscopes/cameras (0.862 for Krios1 and 0.901 for Glacios)
  
 Useful commands: Useful commands:
sagsub.1713945465.txt.gz · Last modified: by Luc Bonnefond