BSI wiki

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.
====== Electron microscopy ======


[[https://igbmc-bsi.calpendo.com|Calpendo Booking system]]


===== Grids preparation =====


[[vitrobot|Vitrobot procedure]]

[[clipping|Clipping procedure]]

[[chameleon|Chameleon procedure]]



----

===== Grids screening and data collection =====

==== Titan microscope ====

==== Titan II microscope ====

[[titan2_ack|Acknowledgement]]

==== Glacios microscope ====

[[glacios_interface|The Glacios microscope interfaces]]

[[glacios_alignment|Basic alignment of the microscope]]

[[glacios_screening|Screening at Glacios]]

[[glacios_collect|Setup automated collect at Glacios]]

[[screening data|Recovering Screening data]]

[[collected datasets|Recovering collected datasets]]


==== TF20 microscope ====

[[TF20_interface|TF20 microscope interfaces]]

[[TF20_screening|Screening at TF20]]

----
===== Datasets analysis =====

[[https://github.com/phonchi/Computational-CryoEM|Computational CryoEM Methods]]

[[hpc|Using the HPC cluster of the Centre de Calcul du Datacenter de l'Unistra (CCDU) a.k.a. mesocenter]]

[[hpc_igbmc|Using the HPC cluster of IGBMC]]

[[calculation servers|CPU and GPU calculation servers]]

[[DMP|CBI-Storage data management plan]]

[[common cryoSPARC|CBI cryoSPARC instance]]

[[team_gpu|Team specific GPU node]]

[[sagsub|Streptavidin affinity grids lattice substraction]]

[[titan_to_process|Pre-processing of dataset from Titan II]]

[[relion|Using Relion]]

[[cryosparc|Using cryoSPARC]]

[[intranet|Accessing IGBMC services from outside]]