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====== List of selected structural biology software available on the IGBMC HPC ======

==== crystallography ====

<code>
albula/3.2.0                       
adxv/1.9.14                        
autoproc/20190214                  
autoproc/20190301                  
autoproc/20190923                  
autoproc/20191129                  
autoproc/20200206                  
autoproc/20200319                  
autoproc/20200918                  
autoproc/20210420                  
autoproc/20211020                  
autoproc/20220608                  
autoproc/20221121
buster/20181127                    
buster/20190301                    
buster/20190607                    
buster/20191129                    
buster/20200206                    
buster/20200319                    
buster/20200918                    
buster/20210420                    
buster/20211020                    
buster/20220608                    
buster/20221121                    
ccp4/7.0                           
ccp4/7.1                           
ccp4/7.1.004
dials/1.8.0                         
h5py/2.10.0                         
h5toxds/1.1.0
phenix/1.12-2829                            
phenix/1.14-3260                            
phenix/1.15.2-3472                          
phenix/1.16-3549                            
phenix/1.17-3644                            
phenix/1.18.2                               
phenix/1.19rc4
xds/2017.6.1
xds/2018.1.26
xds/2019.3.15
xds/20190417
xds/20200417
xds/20210203
xds/20210205
xds/20220110
</code>

==== microscopy ====

<code>
ccpem/1.0.0                        
ccpem/1.1.0                        
ccpem/1.5.0 
cistem/1.0.0-beta                  
cryodrgn/1.1                       
cryolo/1.7.4-gpu                   
cryosparc-worker/4.0.3             
cryosparc/4.0.3                    
ctffind/4.1.8                       
ctffind/4.1.13                      
cuda/8.0                            
cuda/9.0                            
cuda/10.1                           
cudatoolkit/11.6.0                  
eman/2.2                            
eman/2.22                           
eman2/2.3                           
eman2/2.91                          
gctf/1.06                           
imod/4.9.12                 
imod/4.11.2                 
motioncor2/1.0.2            
motioncor2/1.2.6-cuda8.0    
motioncor2/1.2.6-cuda9.2    
motioncor2/1.2.6-cuda10.1   
motioncor2/1.3.1-cuda10.1
relion/2.1-beta1                            
relion/2.1_cuda-9.0                         
relion/2.1_cuda-10.1                        
relion/3.0.5_cuda-9.0                       
relion/3.0.5_cuda-10.1                      
relion/3.0.7                                
relion/3.0.7_cuda-9.0                       
relion/3.0.7_cuda-10.1                      
relion/3.1                                  
relion/3.1.3                                
relion/3.1_cuda-9.0                         
relion/3.1_cuda-10.1                        
relion/4.0.0                                
</code>   
 
==== others ====

<code>
alphafold/2.1.1                    
alphafold/2.1.1-splitted           
alphafold/2.2.2                    
alphafold/2.2.3
chimera/1.12                       
chimera/1.15                       
chimerax/1.5
coot/0.8.2                         
coot/0.9.6                         
coot/0.9.8.1
</code>

You can get the complete list of software on the cluster with command <quote>module avail</quote>