===== CBI common calculation servers =====

You can authenticate yourself on the servers directly using your IGBMC credentials, so the username should be the same, and if you had the same password, it will then be transparent for you.

<quote>ssh <login>@<server_name></quote>

If you are outside IGBMC you first need to log to a gateway: <quote>ssh -XC <login>@passh.u-strasbg.fr</quote>

Here is the updated name list:

  * cbi-compute-01
  * cbi-gpu-03
  * cbi-gpu-04


Useful commands
  * check the slurm queue: <quote>squeue</quote>
  * check the GPU usage : <quote>nvidia-smi</quote>
  * check the software available: <quote>module avail</quote>

----

=== Server specifications ===


**cbi-compute-01**
  * CPU: Intel(R) Xeon(R) CPU E7-4880 v2 @ 2.50GHz
  * Mem: 1 TB

**cbi-gpu-03**
  * CPU: Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz *2
  * Mem: 128 GB
  * GPU: GK210GL [Tesla K80] 12 GB *4

**cbi-gpu-04**
  * CPU: Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz *2
  * Mem: 128 GB
  * GPU: GK210GL [Tesla K80] 12 GB *2
  * GPU: GP100GL [Tesla P100 PCIe 16GB]


----

=== Available softwares ===

as of 2023-05-11

**cbi-compute-01**
  * <quote>/usr/local/modules/modulefiles</quote>
<code>
autoproc/2018  	ccpem/1.4.1-nightly  	gamess/20170511  	phenix/1.11.1  	relion/3.1.2-cpu  
buster/2016    	cistem/1.0.0-beta    	imagic/170515    	phenix/1.12    	xds/2017-03-02    
buster/2017    	dynamo/1.1.291       	imagic/181101    	phenix/1.14    	xds/2017-06-12    
buster/2018  	eman2/2.3   		imod/4.8.14    		phenix/1.18  	xds/2018-04-03  
ccp4/7.0     	eman2/2.9   		imod/4.9.5     		phenix/1.19  	xdsme/20170529
ccpem/1.0.0  	eman2/2.31  		modeller/9.20  		rave/2008    	xmipp/3.19
</code>
  * <quote>/opt/CBI/modulefiles</quote>
<code>
phenix/1.13-2998  relion/2.0.3-cpu  relion/2.1-cpu
</code>
  * <quote>/mnt/storage/software/modulefiles</quote>
<code>
4.0.0-stable        cistem/1.0         		dynamo/1.1.514  		motioncor2/1.5.0  	relion/4.0.0   
itom/2022-03-10     cistem/2021-05-03  		eman2/2.9       		motioncor2/1.6.3  	resmap/1.95    
utoproc/2021-04-20  cryodrgn/0.3.4     		imod/4.11.5     		phenix/1.19.2     	rosetta/3.13
uster/2021-04-20    cryolo-cpu/1.7     		imod/4.11.8     		pyem/0.5          	scipion/3.0.0
ccp4/7.1      	    cryolo-gpu/1.7          imosflm/7.4.0       	pymol/2.5.0         topaz/0.2.5
ccpem/1.5.0   	    cryolo-gpu/1.8          microed_tools/0.1.0 	pyrosetta/291       xds/2021-02-05
chimera/1.15  	    ctffind/4.1.14          modeller/10.2       	relion/3.1.2           	
chimeraX/1.2  	    deep-finder/2021-04-15  motioncor2/1.4.2    	relion/3.1.3(default)  	

</code>

**cbi-gpu-03**
  * <quote>/usr/local/modules/modulefiles</quote>
<code>
chimera/1.11.2  cryolo/1.7  dynamo/1.1.291  eman2/2.2  eman2/2.3  eman2/2.9  eman2/2.12  
imod/4.8.14     imod/4.9.5  imod/4.9.12  motioncor2/1.4  relion/3.1.2-gpu  topaz/0.2.4
</code>
  * <quote>/opt/CBI/modulefiles</quote>
<code>
relion/2.0.3-gpu  relion/2.1-gpu
</code>
  * <quote>/mnt/storage/software/modulefiles</quote>
<code>
4.0.0-stable         	cistem/1.0         	dynamo/1.1.514  	motioncor2/1.5.0  	relion/4.0.0   
aitom/2022-03-10     	cistem/2021-05-03  	eman2/2.9       	motioncor2/1.6.3  	resmap/1.95    
autoproc/2021-04-20  	cryodrgn/0.3.4     	imod/4.11.5     	phenix/1.19.2     	rosetta/3.13
buster/2021-04-20    	cryolo-cpu/1.7     	imod/4.11.8     	pyem/0.5          	scipion/3.0.0
ccp4/7.1      	        cryolo-gpu/1.7          imosflm/7.4.0        	pymol/2.5.0            	topaz/0.2.5
ccpem/1.5.0   	        cryolo-gpu/1.8          microed_tools/0.1.0  	pyrosetta/291          	xds/2021-02-05
chimera/1.15  	        ctffind/4.1.14          modeller/10.2        	relion/3.1.2           	
chimeraX/1.2  	        deep-finder/2021-04-15  motioncor2/1.4.2     	relion/3.1.3(default)
</code>

**cbi-gpu-04**
  * <quote>/mnt/storage/software/modulefiles</quote>
<code>
4.0.0-stable		cistem/1.0             dynamo/1.1.514  	        motioncor2/1.5.0  	relion/4.0.0   
aitom/2022-03-10	cistem/2021-05-03      eman2/2.9       	        motioncor2/1.6.3  	resmap/1.95    
autoproc/2021-04-20	cryodrgn/0.3.4         imod/4.11.5     	        phenix/1.19.2     	rosetta/3.13
buster/2021-04-20	cryolo-cpu/1.7         imod/4.11.8     	        pyem/0.5          	scipion/3.0.0
ccp4/7.1      		cryolo-gpu/1.7	       imosflm/7.4.0		pymol/2.5.0		topaz/0.2.5
ccpem/1.5.0   		cryolo-gpu/1.8	       microed_tools/0.1.0	pyrosetta/291		xds/2021-02-05
chimera/1.15  		ctffind/4.1.14	       modeller/10.2		relion/3.1.2           	
chimeraX/1.2  		deep-finder/2021-04-15 motioncor2/1.4.2	        relion/3.1.3(default)
</code>