If you have any data coming from the microscopes, it should be available to transfer from /mnt/gateway/teams/<your_team>/<your_project>/<your_dataset>

The best way to transfer it is to use rclone, here is a usage exemple:

  rclone copy -P -l --transfers=6 /mnt/gateway/teams/<source>/ /mnt/storage/teams/<destination>/

rclone behaves exactly like rsync but adds the parallel transfer feature
--transferts=6 being the number of parallel transfers, you can try to tweak it to optimize the transfer speed but 6 seems to work well.