===== Crystallography =====


==== Data Collection ====

  * [[crystallography:collection:prepare_loops|Prepare loops]]
  * [[In-house|In-house]]
  * [[crystallography:synchrotron|Synchrotron]]


==== Dataset storage ====


Save the frames from the datasets in //\syno\frames\date_beamline//.
Don't forget to unprotect the folders with //chmod -R 777//


==== Data processing ====


Create a directory //\syno\frames\proc_date_beamline// with subfolders for each dataset named with the drop code.
Don't forget to unprotect the folders with //chmod -R 777//

Create //\xds// or //\hkl// and //\ccp4// sub-directories 

  * [[crystallography:processing:xds_procedure|XDS procedure]]
  * [[crystallography:processing:xds_detailed_procedure|XDS detailed procedure by Diederich]]
  * [[HKL2000 procedure|HKL2000 procedure]]
  * HKL3000 procedure

  * [[crystallography:processing:aimless_procedure|Aimless procedure]]
  * [[crystallography:processing:resolution_cut|Choosing the resolution cut]]
  * Structure refinement
  * [[crystallography:processing:structure_polishing|Structure polishing]]

  * [[crystallography:processing:cif|Ligand restrains]]

  * [[crystallography:processing:igbmc_cluster|Access and usage of the IGBMC HPC cluster]]
  * [[crystallography:processing:microscopy_cluster|Access and usage of the CBI microscopy calculation cluster]]




==== Data deposition ====

  * [[Prepare files|Prepare files]]
  * [[Items to check|Items to check]]
  * [[Deposition procedure|Deposition procedure]]
  * [[crystallography:deposition:data_storage|Data storage]]