==== Generate PDB and CIF restrain files for ligands of the LH series ==== - Prepare the 2D chemical structure using Marvin Sketch (ChemAxon) - Add hydrogen atoms to the structure (Structure>Add>Explicit hydrogens) - Convert to 3D (Structure>Clean 3D>Clean in 3D) - Save as Tripos mol2 file (*.mol2) - Go to GRADE server [[http://grade.globalphasing.org/cgi-bin/grade/server.cgi]] - Choose the mol2 file import option - Indicate a 3 letter code and the complete ligand name - Indicate the net charge if necessary - Check the resulting 2D structure displayed and save PDB and CIF files