crystallography:processing:xds_procedure
XDS procedure
>setxds >xdsgui
Create a project in the xds subfolder Load the first frame of the dataset from /syno/frames/date_beamline/drop/… Generate XDS.INP Run XDS
- if the correct spacegroup and cell parameters were not identified by IDREF, provide them in XDS.INP
- if there is no anomalous signal to use, specify
FRIEDEL_LAW= TRUE
Check the statistics and estimate the resolution limit at which CC(1/2)=0.1 (the last shell with a star)
Re-run XDS with the specified resolution limit with only JOB= CORRECT
Item to check in XDS
- FRAME.cbf (last frame processed by INTEGRATE) for spot shape, splitting, multiple lattice, predicted/observed diffraction pattern, ice rings
- INTEGRATE.LP jumps or large changes in frame-wise parameters (sacle factors, mosaicity, beam divergence, cell, distance, …)
- CORRECT.LP reports systematic errors (ISa) and precision of unmerged and merged intensities (Rmeas and CC(1/2))
Run XDSSTAT to analyze XDS_ASCII.HKL in XDSSTAT.LP
crystallography/processing/xds_procedure.txt · Last modified: by 127.0.0.1
