calculation_servers
CBI common calculation servers
You can authenticate yourself on the servers directly using your IGBMC credentials, so the username should be the same, and if you had the same password, it will then be transparent for you.
ssh <login>@<server_name>
If you are outside IGBMC you first need to log to a gateway: ssh -XC <login>@passh.u-strasbg.fr
Here is the updated name list:
- cbi-compute-01
- cbi-gpu-03
- cbi-gpu-04
Useful commands
- check the slurm queue:
squeue
- check the GPU usage :
nvidia-smi
- check the software available:
module avail
Server specifications
cbi-compute-01
- CPU: Intel(R) Xeon(R) CPU E7-4880 v2 @ 2.50GHz
- Mem: 1 TB
cbi-gpu-03
- CPU: Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz *2
- Mem: 128 GB
- GPU: GK210GL [Tesla K80] 12 GB *4
cbi-gpu-04
- CPU: Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz *2
- Mem: 128 GB
- GPU: GK210GL [Tesla K80] 12 GB *2
- GPU: GP100GL [Tesla P100 PCIe 16GB]
Available softwares
as of 2023-05-11
cbi-compute-01
/usr/local/modules/modulefiles
autoproc/2018 ccpem/1.4.1-nightly gamess/20170511 phenix/1.11.1 relion/3.1.2-cpu buster/2016 cistem/1.0.0-beta imagic/170515 phenix/1.12 xds/2017-03-02 buster/2017 dynamo/1.1.291 imagic/181101 phenix/1.14 xds/2017-06-12 buster/2018 eman2/2.3 imod/4.8.14 phenix/1.18 xds/2018-04-03 ccp4/7.0 eman2/2.9 imod/4.9.5 phenix/1.19 xdsme/20170529 ccpem/1.0.0 eman2/2.31 modeller/9.20 rave/2008 xmipp/3.19
/opt/CBI/modulefiles
phenix/1.13-2998 relion/2.0.3-cpu relion/2.1-cpu
/mnt/storage/software/modulefiles
4.0.0-stable cistem/1.0 dynamo/1.1.514 motioncor2/1.5.0 relion/4.0.0 itom/2022-03-10 cistem/2021-05-03 eman2/2.9 motioncor2/1.6.3 resmap/1.95 utoproc/2021-04-20 cryodrgn/0.3.4 imod/4.11.5 phenix/1.19.2 rosetta/3.13 uster/2021-04-20 cryolo-cpu/1.7 imod/4.11.8 pyem/0.5 scipion/3.0.0 ccp4/7.1 cryolo-gpu/1.7 imosflm/7.4.0 pymol/2.5.0 topaz/0.2.5 ccpem/1.5.0 cryolo-gpu/1.8 microed_tools/0.1.0 pyrosetta/291 xds/2021-02-05 chimera/1.15 ctffind/4.1.14 modeller/10.2 relion/3.1.2 chimeraX/1.2 deep-finder/2021-04-15 motioncor2/1.4.2 relion/3.1.3(default)
cbi-gpu-03
/usr/local/modules/modulefiles
chimera/1.11.2 cryolo/1.7 dynamo/1.1.291 eman2/2.2 eman2/2.3 eman2/2.9 eman2/2.12 imod/4.8.14 imod/4.9.5 imod/4.9.12 motioncor2/1.4 relion/3.1.2-gpu topaz/0.2.4
/opt/CBI/modulefiles
relion/2.0.3-gpu relion/2.1-gpu
/mnt/storage/software/modulefiles
4.0.0-stable cistem/1.0 dynamo/1.1.514 motioncor2/1.5.0 relion/4.0.0 aitom/2022-03-10 cistem/2021-05-03 eman2/2.9 motioncor2/1.6.3 resmap/1.95 autoproc/2021-04-20 cryodrgn/0.3.4 imod/4.11.5 phenix/1.19.2 rosetta/3.13 buster/2021-04-20 cryolo-cpu/1.7 imod/4.11.8 pyem/0.5 scipion/3.0.0 ccp4/7.1 cryolo-gpu/1.7 imosflm/7.4.0 pymol/2.5.0 topaz/0.2.5 ccpem/1.5.0 cryolo-gpu/1.8 microed_tools/0.1.0 pyrosetta/291 xds/2021-02-05 chimera/1.15 ctffind/4.1.14 modeller/10.2 relion/3.1.2 chimeraX/1.2 deep-finder/2021-04-15 motioncor2/1.4.2 relion/3.1.3(default)
cbi-gpu-04
/mnt/storage/software/modulefiles
4.0.0-stable cistem/1.0 dynamo/1.1.514 motioncor2/1.5.0 relion/4.0.0 aitom/2022-03-10 cistem/2021-05-03 eman2/2.9 motioncor2/1.6.3 resmap/1.95 autoproc/2021-04-20 cryodrgn/0.3.4 imod/4.11.5 phenix/1.19.2 rosetta/3.13 buster/2021-04-20 cryolo-cpu/1.7 imod/4.11.8 pyem/0.5 scipion/3.0.0 ccp4/7.1 cryolo-gpu/1.7 imosflm/7.4.0 pymol/2.5.0 topaz/0.2.5 ccpem/1.5.0 cryolo-gpu/1.8 microed_tools/0.1.0 pyrosetta/291 xds/2021-02-05 chimera/1.15 ctffind/4.1.14 modeller/10.2 relion/3.1.2 chimeraX/1.2 deep-finder/2021-04-15 motioncor2/1.4.2 relion/3.1.3(default)
calculation_servers.txt · Last modified: by 127.0.0.1