The VitrobotTM (Vitrification Robot) is a fully PC-controlled device for vitrification (= rapid cooling) of aqueous samples

• fill a dried 5 L tank with liquid nitrogen
• label the grid boxes
• check a number of points:
  • plasma cleaner is reserved
  • EM_grids grids are available and present in sufficient number
  • all part of the coolant container are dry
  • close climate chamber's door if open
  • Paper filter clipping ring are not missing

• 1. Switching on vitrobot

  • Press the hard lock switch on the right backside of the machine

  

  • The Vitrobot User Interface page will appear after a few seconds.
    • Console page is dedicated to set humidity and temperature parameters
    • options page is dedicated to set blotting process parameters

• 2. Make sure the humidifier is operational
  • check humificator beaker state in humidity panel

    

  • if EMPTY refill it with distilled water

    Use ONLY distilled water

    • 1. Fill a syringe with 60 ml distilled water
    • 2. inject the whole volume through the plastic tube at the bottom part of the humidifier
    • 3. When removing the syringe from the tube, be careful not to tear it from its location

    

• 3. hermetically close the chamber

  • do the following dry Run:
    • Place new grid / continue / place ethane container

  • the white latch remains in open position after swith on the power.

This step is done on the control panel, in the options page

• 1. adjust desired temperature value
  • : to any value between 4 and 60°

    • the actual temperature value is displayed in red
    • set to any desired value with + and buttons in temperature panel

    

• 2. adjust desired humidify value
  • 96-100 % generally

    • the current humidity is displayed in blue
    • set to desired value with + and - buttons in humidify panel

    

• 3. wait until desired temperature is reached
  • take advantages from this waiting time to start next step :

    load grids inside the plasma cleaner

• 4. then enable the humidity switchbox to start

  • a. read current temperature (red value) in panel temperature
  • b. press ON/OFF switch in panel humidity

  

• 1. switch on plasma cleaner if not started

  • If stopped, press the hard lock switch on the backside of the machine,
  • Press CLEAR to initialyze the vaccum system

  

  • fishione started with chamber locked under vaccum
  • READY / HIGH VACCUM messages

• 2. press Vent Lock to bring the chamber under atmospheric pressure
  • State is reached when message Lock At Atmosphere appears

From now on IMPERATIVELY wears gloves

• 3. Open chamber and make sure the seal remains in place

  • a. unlock the rod by pushing the button on it
  • b. pull the rod upwards to lift the cover
  • b. move the cover on the side around its axis
  • c. if necessary put back the seal in place.
    • It can either stick on the cover or come out of its channel

• 4. retrieve the metallic drawer and place it on the table

  • the support carrying the drawer can be taken out by lifting it by the rod.
  • Be sure to keep the table horizontal so as not to slide the drawer

  • the metallic drawer is ALWAYS stored in the chamber
• 5. close the door to prevent dust contamination inside the chamber
• 6. place EM_grids inside the metallic drawer

  • remove the cover of the metallic drawer by sliding
  • place EM_grids inside
  • generally sets of 4 to 8 IDENTICAL grids are loaded simultaneously
  • close the drawer by putting back in place the cover
  • put back in place the closed drawer on the support table

  • generally sets of 4 to 8 IDENTICAL grids are loaded simultaneously
• 7. open the door and make sure the seal remains in place

  • a. if necessary put the seal back in place
    • It can either stick to the cover or come out of its channel
  • b.clean it just by passing your finger

• 8. put back in place the metallic drawer inside the chamber
  • on the plateform NOT on the inlet pump

• 9. close the door

  • a. be sure the seal is in place and clean (see part.7)
  • b. move the lid around its axis to bring it over the opening of the chamber
  • c. unlock the rod by pushing the button
  • d. gently allow the lid to slide down

• 10. press VACCUM to bring the chamber under vaccum
  • State reached when message “HIGH VACCUM” appears
• 11. if not yet done on vitrobot, enable the humidity switchbox to start

• legende

  • A : central ethane cup
  • B : grid box plateform
  • C : spindle
  • D : Ice contamination protective sleeve (optional)
  • E : outer nitrogen container

• 1. Pour LN2 into both central ethan cup (A) and outer part (E) to faster the cooling
• 2. Wait for complete evaporation of the remaining nitrogen in the central part
• 3. up to now continously fill the outer part to maintain the Nitrogen level
• 4. wait 10 to 15 min for system to equilibrate
• 5. then liquefy the ethan in the central cup already cooled to liquid nitrogen temperature

  Ethan is liquefied by flowing a stream of gas through plastic tubing connected to an ethane flask into the central cup

• 6. let ethane start to solidify for few seconds

  apparence of a white solid rim around the wall container indicates that ethane starts to solidify

• 7. then remove the spindle (C)

  solidified ethan makes stick together the spindle and the ethan cup. Thawing the frozen ethan by placing the second ethan cup on the spindle for 10sec is the more careful way to remove it

• 8. place grid box into the grid box platform (B)
  • make sure that the grid box is labelled with the experiment name

• IMPORTANT always wears gloves
• place blot papers onto the blotting pads with clipping ring
• support the blotting arms during assembling to prevent damage to the arms

• Grids are already loaded inside the plasma cleaner
  • if not yet done

    see part

    load grids inside the plasma cleaner

• set desired plasma cleaning parameters :gas mixture/gas flow power
  • commonly settings 80-20-0 are used

    • The setup TABS store preset parameters
    • settings 80-20-0 corresponds to Gas mix Oxy/Ar : 80/20, power 34%
    • Gas Mix and plasma TABS show preset values

    

    • Gas Mix and plasma TABS show preset values

• adjust the plasma cleaning time with up/down arrows head and press set
  • commonly 90 s are used
• press START to apply plasma on grids

• 1. set or checkcheck the blotting condition
• 1. press place new grid
• 2. Attach Vitrobot tweezers with a grid onto the plunge rod
• 3. press to bring up the tweezers into the blotting chamber
• 4. place the container onto the ethane lift
• 5. press to lift it
• 6. click on “process”
• 7. apply sample to grid
• 8. click on “continue” to blot and plunge

* Now vitrobot is ready for freezingbeforeDo it when you are almost ready to freeze to keep the soaking time as reproducible as possible

     ====== At this point already is ready for freezing ======

  At this point already is ready for freezing:
  climate chamber is equilibrated in temperature and humidity.
  Filter paper are mounted and soaking time is controlled
  ethane is liquefied
  Grids are loaded and ready to be plasma cleaned

3. Bring the vitrobot to hermetically close the chamber

* ++ Do it when you are almost ready to freeze to keep the soaking time as reproducible as possible|<div>

• Do it when you are almost ready to freeze to keep the soaking time as reproducible as possible

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